Confidence interval using z score,guided mindfulness meditation free download,silent clearing meditation,how can i change email address on yahoo - Step 2

Cross Validated is a question and answer site for people interested in statistics, machine learning, data analysis, data mining, and data visualization. How to determine cutoff point for this test and its confidence interval where readings should be judged as ambiguous?
If sensitivity and specificity have the same importance to you, one way of calculating the cut-off is choosing that value that minimizes the Euclidean distance between your ROC curve and the upper left corner of your graph.
Another way is using the value that maximizes (sensitivity + specificity - 1) as a cut-off. Unfortunately, I do not have references for these two methods as I have learned them from professors or other statisticians.
Finally I had found an R package OptimalCutpoints dedicated exactly to finding cutoff point in such type of analysis. So now the task is narrowed to selecting the method that is the best match for each situation. There are many other configuration options described in package documentation including several methods of determining confidence intervals and detailed description of each of the methods. If you look closer at source code I had used this package and read the documentation to this package.
Not the answer you're looking for?Browse other questions tagged r data-visualization confidence-interval roc ggplot2 or ask your own question. How to evaluate the optimal cutoff of ROC curve related to logistic regression using roc from the R package pROC? Is it unethical to say my current employer has financial problems when looking for another job? As noted in earlier modules a key goal in applied biostatistics is to make inferences about unknown population parameters based on sample statistics.
Strictly speaking a 95% confidence interval means that if we were to take 100 different samples and compute a 95% confidence interval for each sample, then approximately 95 of the 100 confidence intervals will contain the true mean value (μ). Suppose we want to generate a 95% confidence interval estimate for an unknown population mean.
Using algebra, we can rework this inequality such that the mean (μ) is the middle term, as shown below. In the health-related publications a 95% confidence interval is most often used, but this is an arbitrary value, and other confidence levels can be selected. With smaller samples (n< 30) the Central Limit Theorem does not apply, and another distribution called the t distribution must be used. Suppose we wish to estimate the mean systolic blood pressure, body mass index, total cholesterol level or white blood cell count in a single target population. Descriptive statistics on variables measured in a sample of a n=3,539 participants attending the 7th examination of the offspring in the Framingham Heart Study are shown below. The table below shows data on a subsample of n=10 participants in the 7th examination of the Framingham offspring Study. Suppose we compute a 95% confidence interval for the true systolic blood pressure using data in the subsample.
Suppose we wish to estimate the proportion of people with diabetes in a population or the proportion of people with hypertension or obesity.
This formula is appropriate for large samples, defined as at least 5 successes and at least 5 failures in the sample. Specific applications of estimation for a single population with a dichotomous outcome involve estimating prevalence, cumulative incidence, and incidence rates. The table below, from the 5th examination of the Framingham Offspring cohort, shows the number of men and women found with or without cardiovascular disease (CVD). There are many situations where it is of interest to compare two groups with respect to their mean scores on a continuous outcome. We could begin by computing the sample sizes (n1 and n2), means 1 and 2), and standard deviations (s1 and s2) in each sample.
The confidence interval will be computed using either the Z or t distribution for the selected confidence level and the standard error of the point estimate.
Where Sp is the pooled estimate of the common standard deviation (assuming that the variances in the populations are similar) computed as the weighted average of the standard deviations in the samples. Suppose we want to compare mean systolic blood pressures in men versus women using a 95% confidence interval. The following table includes 95% confidence intervals for each characteristic, computed using the same formula we used for the confidence interval for the difference in mean systolic blood pressures.
The confidence interval for the difference in means provides an estimate of the absolute difference in means of the outcome variable of interest between the comparison groups.
We previously considered a subsample of n=10 participants attending the 7th examination of the Offspring cohort in the Framingham Heart Study. Suppose we wish to construct a 95% confidence interval for the difference in mean systolic blood pressures between men and women using these data. The previous section dealt with confidence intervals for the difference in means between two independent groups.
A single sample of participants and each participant is measured twice, once before and then after an intervention.
A goal of these studies might be to compare the mean scores measured before and after the intervention, or to compare the mean scores obtained with the two conditions in a crossover study.
For example, we might be interested in the difference in an outcome between twins or between siblings.
In the one sample and two independent samples applications participants are the units of analysis.
However, with two dependent samples application,the pair is the unit (and not the number of measurements which is twice the number of units).
In the Framingham Offspring Study, participants attend clinical examinations approximately every four years. We can now use these descriptive statistics to compute a 95% confidence interval for the mean difference in systolic blood pressures in the population.
A crossover trial is conducted to evaluate the effectiveness of a new drug designed to reduce symptoms of depression in adults over 65 years of age following a stroke. One can compute a risk difference, which is computed by taking the difference in proportions between comparison groups and is similar to the estimate of the difference in means for a continuous outcome.

The risk ratio (or relative risk) is another useful measure to compare proportions between two independent populations and it is computed by taking the ratio of proportions.
Note that this formula is appropriate for large samples (at least 5 successes and at least 5 failures in each sample).
The following table contains data on prevalent cardiovascular disease (CVD) among participants who were currently non-smokers and those who were current smokers at the time of the fifth examination in the Framingham Offspring Study. A randomized trial is conducted among 100 subjects to evaluate the effectiveness of a newly developed pain reliever designed to reduce pain in patients following joint replacement surgery. Using the data in the table below, compute the point estimate for the difference in proportion of pain relief of 3+ points.are observed in the trial.
Compute the 95% confidence interval for the difference in proportions of patients reporting relief (in this case a risk difference, since it is a difference in cumulative incidence). The risk difference quantifies the absolute difference in risk or prevalence, whereas the relative risk is, as the name indicates, a relative measure.
The relative risk is a ratio and does not follow a normal distribution, regardless of the sample sizes in the comparison groups. A confidence interval is an estimate of a range of values that includes the true population value for a statistic, such as a mean. In the example below, ten participants were asked to complete a task and the time in seconds was recorded. In this example, alpha is set to 0.05 (a 95% confidence level), the standard deviation is calculated using the Excel STDEV function and the sample size is calculated using the Excel COUNT function.
Often times you may want to display your data in graphical form, including the confidence interval.
You might weight sensitivity and specificity differently (for example, maybe for you it is more important to have a high sensitive test even though this means having a low specific test. I agree that there could be no one correct answer and criteria greatly depend on the aims that stand behind of the certain diagnostic test. Although I do not hold the copyright for this material, I am reproducing it here as a service, as it is no longer available on the Children's Mercy Hospital website.
Many of the outcomes we are interested in estimating are either continuous or dichotomous variables, although there are other types which are discussed in a later module.
In practice, however, we select one random sample and generate one confidence interval, which may or may not contain the true mean. This means that there is a 95% probability that the confidence interval will contain the true population mean.
However, if the sample size is large (n > 30), then the sample standard deviations can be used to estimate the population standard deviation. Note that for a given sample, the 99% confidence interval would be wider than the 95% confidence interval, because it allows one to be more confident that the unknown population parameter is contained within the interval. The t distribution is similar to the standard normal distribution but takes a slightly different shape depending on the sample size.
We select a sample and compute descriptive statistics including the sample size (n), the sample mean, and the sample standard deviation (s). The margin of error is very small (the confidence interval is narrow), because the sample size is large.
Because the sample size is small, we must now use the confidence interval formula that involves t rather than Z.
These diagnoses are defined by specific levels of laboratory tests and measurements of blood pressure and body mass index, respectively. For example, we might be interested in comparing mean systolic blood pressure in men and women, or perhaps compare BMI in smokers and non-smokers.
For analysis, we have samples from each of the comparison populations, and if the sample variances are similar, then the assumption about variability in the populations is reasonable. The sample is large (> 30 for both men and women), so we can use the confidence interval formula with Z.
Next we substitute the Z score for 95% confidence, Sp=19, the sample means, and the sample sizes into the equation for the confidence interval. The following table contains descriptive statistics on the same continuous characteristics in the subsample stratified by sex. There is an alternative study design in which two comparison groups are dependent, matched or paired.
Participants are usually randomly assigned to receive their first treatment and then the other treatment. Symptoms of depression are measured on a scale of 0-100 with higher scores indicative of more frequent and severe symptoms of depression. When the outcome is dichotomous, the analysis involves comparing the proportions of successes between the two groups. The risk ratio is a good measure of the strength of an effect, while the risk difference is a better measure of the public health impact, because it compares the difference in absolute risk and, therefore provides an indication of how many people might benefit from an intervention.
When constructing confidence intervals for the risk difference, the convention is to call the exposed or treated group 1 and the unexposed or untreated group 2. However, the natural log (Ln) of the sample RR, is approximately normally distributed and is used to produce the confidence interval for the relative risk. The level of confidence you choose will determine how reasonably certain the true population mean is included in the range. Using the CONFIDENCE function in Excel, we can calculate the confidence interval of the sample data to estimate the range that contains the population mean.
The chart below shows the mean of the data set above and graphs the confidence interval 13.02 as an error bar. The parameters to be estimated depend not only on whether the endpoint is continuous or dichotomous, but also on the number of groups being studied. Recall that sample means and sample proportions are unbiased estimates of the corresponding population parameters. In a sense, one could think of the t distribution as a family of distributions for smaller samples.
The formulas for confidence intervals for the population mean depend on the sample size and are given below. Both of these situations involve comparisons between two independent groups, meaning that there are different people in the groups being compared.

The standard error of the point estimate will incorporate the variability in the outcome of interest in each of the comparison groups. The men have higher mean values on each of the other characteristics considered (indicated by the positive confidence intervals). This judgment is based on whether the observed difference is beyond that expected by chance. We compute the sample size (which in this case is the number of distinct participants or distinct pairs), the mean and standard deviation of the difference scores, and we denote these summary statistics as n, d and sd, respectively.
The data below are systolic blood pressures measured at the sixth and seventh examinations in a subsample of n=15 randomly selected participants.
This is similar to a one sample problem with a continuous outcome except that we are now using the difference scores.
Because the 95% confidence interval for the mean difference does not include zero, we can conclude that there is a statistically significant difference (in this case a significant improvement) in depressive symptom scores after taking the new drug as compared to placebo.
Here smoking status defines the comparison groups, and we will call the current smokers group 1 and the non-smokers group 2. Because the 95% confidence interval includes zero, we conclude that the difference in prevalent CVD between smokers and non-smokers is not statistically significant. Patients are randomly assigned to receive either the new pain reliever or the standard pain reliever following surgery. A confidence level of 95% means that you can be 95% certain, or wrong 5% of the time, that the sample being analyzed contains the population mean. For example, a confidence level of 95% has an alpha of 5%, in other words, alpha is equal to 1 minus the confidence level. When the outcome of interest is dichotomous like this, the record for each member of the sample indicates having the condition or characteristic of interest or not. If we assume equal variances between groups, we can pool the information on variability (sample variances) to generate an estimate of the population variability. However,we will first check whether the assumption of equality of population variances is reasonable. The appropriate formula for the confidence interval for the mean difference depends on the sample size.
Since the data in the two samples (examination 6 and 7) are matched, we compute difference scores by subtracting the blood pressure measured at examination 7 from that measured at examination 6 or vice versa. The trial was run as a crossover trial in which each patient received both the new drug and a placebo. It is the ratio of the odds or disease in those with a risk factor compared to the odds of disease in those without the risk factor. A confidence interval for the difference in prevalent CVD (or prevalence difference) between smokers and non-smokers is given below. By convention we typically regard the unexposed (or least exposed) group as the comparison group, and the proportion of successes or the risk for the unexposed comparison group is the denominator for the ratio.
First, a confidence interval is generated for Ln(RR), and then the antilog of the upper and lower limits of the confidence interval for Ln(RR) are computed to give the upper and lower limits of the confidence interval for the RR.
The sample should be representative of the population, with participants selected at random from the population.
In contrast, when comparing two independent samples in this fashion the confidence interval provides a range of values for the difference.
If a 95% confidence interval includes the null value, then there is no statistically meaningful or statistically significant difference between the groups.
Based on this interval, we also conclude that there is no statistically significant difference in mean systolic blood pressures between men and women, because the 95% confidence interval includes the null value, zero.
When the samples are dependent, we cannot use the techniques in the previous section to compare means.
Before receiving the assigned treatment, patients are asked to rate their pain on a scale of 0-10 with high scores indicative of more pain. In generating estimates, it is also important to quantify the precision of estimates from different samples. Rather, it reflects the amount of random error in the sample and provides a range of values that are likely to include the unknown parameter. Just as with large samples, the t distribution assumes that the outcome of interest is approximately normally distributed. If the confidence interval does not include the null value, then we conclude that there is a statistically significant difference between the groups.
Because the samples are dependent, statistical techniques that account for the dependency must be used. Each patient is then given the assigned treatment and after 30 minutes is again asked to rate their pain on the same scale.
Another way of thinking about a confidence interval is that it is the range of likely values of the parameter (defined as the point estimate + margin of error) with a specified level of confidence (which is similar to a probability).
For each of the characteristics in the table above there is a statistically significant difference in means between men and women, because none of the confidence intervals include the null value, zero.
Since the interval contains zero (no difference), we do not have sufficient evidence to conclude that there is a difference. When the outcome is continuous, the assessment of a treatment effect in a crossover trial is performed using the techniques described here. The difference in depressive symptoms was measured in each patient by subtracting the depressive symptom score after taking the placebo from the depressive symptom score after taking the new drug. All of these measures (risk difference, risk ratio, odds ratio) are used as measures of association by epidemiologists, and these three measures are considered in more detail in the module on Measures of Association in the core course in epidemiology. Note also that this 95% confidence interval for the difference in mean blood pressures is much wider here than the one based on the full sample derived in the previous example, because the very small sample size produces a very imprecise estimate of the difference in mean systolic blood pressures.
Confidence interval estimates for the risk difference, the relative risk and the odds ratio are described below.
When there are small differences between groups, it may be possible to demonstrate that the differences are statistically significant if the sample size is sufficiently large, as it is in this example.

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