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02.10.2014
Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar, Bhavna Hora, Anna Berg, Fangping Cai, Jennifer Hopper, Thomas N Denny, Hairao Ding, Christina Ochsenbauer, John C Kappes, Rachel P Galimidi, Anthony P Jr West, Pamela J Bjorkman, Craig B Wilen, Robert W Doms, Meagan O'Brien, Nina Bhardwaj, Persephone Borrow, Barton F Haynes, Mark Muldoon, James P Theiler, Bette Korber, George M Shaw and Beatrice H Hahn, Phenotypic properties of transmitted founder HIV-1, PNAS, 110, (2013). Sampa Santra, Mark Muldoon, Sydeaka Watson, Adam Buzby, Harikrishnan Balachandran, Kevin R.
David Broomhead, Jeremy Huke, James Montaldi and Mark Muldoon, Finite-dimensional behaviour and observability in a randomly forced PDE, Dynamical Systems, 27, (2012). Mark Muldoon, Jeremy Huke and Kieran Smallbone, Dave Broomhead's 60th Birthday, Mathematics Today, 47, (2011). Sampa Santra, Hua-Xin Liao, Ruijin Zhang, Mark Muldoon, Sydeaka Watson, Will Fischer, James Theiler, James Szinger, Harikrishnan Balachandran, Adam Buzby, David Quinn, Robert J. Karina Yusim, Martine Peters, Oliver Pybus, Tanmoy Bhattacharya, Eric Delaporte, Claire Mulanaga, Mark Muldoon, James Theiler and Bette Korber, Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution, Philosophical Transactions of the Royal Society of London, B, 356, (2001).
Munir Alam, Mark Muldoon, Nathan Vandergrift, Ben-Jiang Ma, Xiaozhi Lu, Laura L Sutherland, Richard M. Gnanakaran, Mark Muldoon, Marcus Daniels, Webster Kasongo, Victor Chalwe, Chanda Mulenga, Lawrence Mwananyanda, Rosemary M. Wearne, A novel Ocular Anaesthetic Scoring System, OASS, tool to measure both motor and sensory function following local anaesthesia, British Journal of Ophthalmology, 94, (2010).
Koup, Mark Muldoon, Catherine Macken, Jia-Li Song, Zhanqun Jin, Jla-Qi Zhao, Sheila Clapp, Irvin S. Doig, Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory, PLoS ONE, 8, (2013).
Brown, Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified, Journal of Archaeological Science, 37, (2010).


Korber and Sampa Santra, Cross-reactive potential of human T-lymphocyte responses in HIV-1 infection, Vaccine, 32, (2014). Muldoon, The Small World of Corporate Boards, Journal of Business Finance and Accounting, 33, (2006). Muldoon, Diffusing through spectres: ridge curves, ghost circles and a partition of phase space, Physics Letters A, 178, (1993).
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Haynes and Feng Gao, Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120, Virology, 409, (2011). Letvin, A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys, Proceedings of the National Academy of Sciences of the USA, 105, (2008). Muldoon, Codes for spread spectrum applications generated using chaotic dynamical systems, Dynamics and Stability of Systems, 14, (1999). Ammann and the Ariel Project Investigators, Maternal HIV-1 viral load and vertical transmission of infection: The Ariel Project for the prevention of HIV transmission from mother to infant, Nature Medicine, 3, (1997). Letvin, Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys, Nature Medicine, 16, (2010). Stark, Iterated Function System Models of Digital Channels, Proceedings of the Royal Society of London, Series A, 460, (2004). Hegger, Delay embedding in the presence of dynamical noise, Dynamics and Stability of Systems, 13, (1998).


Korber, Susan Allen and Eric Hunter, Envelope-Constrained Neutralization-Sensitive HIV-1 After Heterosexual Transmission, Science, 303, (2004).
Koup and the ARIEL Project Investigators, Longitudinal and Cross-Sectional Analysis of Cytotoxic T Lymphocyte (CTL) Responses and their Relationship to Vertical HIV Transmission, Journal of Infectious Diseases, 178, (1998).
Derdeyn, Unique Mutational Patterns in the Envelope α2 Amphipathic Helix and Acquisition of Length in gp120 Hypervariable Domains Are Associated with Resistance to Autologous Neutralization of Subtype C Human Immunodeficiency Virus Type 1, Journal of Virology, 81, (2007). Stewart, Control of free length when coiling a helical spring, IEE Proceedings-Control Theory and Applications, 148, (2001). Korber, Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses, Journal of Immunology, 179, (2007).
Akman, Characterisation of congenital nystagmus waveforms in terms of periodic orbits, Vision Research, 42, (2002).
Abadi, Modelling of congenital nystagmus waveforms produced by saccadic system abnormalities, Biological Cybernetics, 82, (2000). Szinger, Will Fischer, Mark Muldoon and Bette Korber, Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys, Nature Medicine, 16, (2010). Wolinsky and the Ariel Core Investigators, The Ariel Project: A prospective cohort study of maternal-child transmission of human immunodeficiency virus type 1 in the era of maternal antiretroviral therapy, Journal of Infectious Diseases, 179, (1999).
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